Transcript: lnc-SOX17-1:1

Basic information

LNCipedia transcript ID: lnc-SOX17-1:1 
LNCipedia gene ID: lnc-SOX17-1
Location (hg19): chr8:55291718-55293397
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 248 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014700; NONHSAT126633
Alternative gene names: XLOC_006798; linc-SOX17-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 37.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOX17-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX17-1:1
3.1 lnc-SOX17-1:1
4.0 lnc-SOX17-1:1
4.1 lnc-SOX17-1:1
5.0 lnc-SOX17-1:1
5.1 lnc-SDCBP-69:2
5.2 lnc-SOX17-1:1