Transcript: lnc-SOX5-5:35

Basic information

LNCipedia transcript ID: lnc-SOX5-5:35 
LNCipedia gene ID: lnc-SOX5-5
Location (hg19): chr12:23728747-23891440
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 570 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT027307
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -342.4926 non-coding 
CPAT coding probability 74.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOX5-5:35 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0528-5:1
4.0 lnc-KIAA0528-5:1
4.1 lnc-SOX5-5:35
5.0 lnc-SOX5-5:35
5.1 lnc-WBP11-68:35
5.2 lnc-SOX5-5:35