Transcript: lnc-SOX6-1:1

Basic information

LNCipedia transcript ID: lnc-SOX6-1:1 
LNCipedia gene ID: lnc-SOX6-1
Location (hg19): chr11:15932520-15933620
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 386 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019584; NONHSAT018163
Alternative gene names: XLOC_009382; linc-CALCA


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.2324 non-coding 
CPAT coding probability 31.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX6-1:1 no no no no

Available literature

  1. Fang (2014), Long non-coding RNAs are differentially expressed in hepatocellular carcinoma cell lines with differing metastatic potential., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX6-1:1
3.1 lnc-SOX6-1:1
4.0 lnc-SOX6-1:1
4.1 lnc-SOX6-1:1
5.0 lnc-SOX6-1:1
5.1 lnc-SOX6-8:1
5.2 lnc-SOX6-1:1