Transcript: lnc-SPACA5B-3:2

Basic information

LNCipedia transcript ID: lnc-SPACA5B-3:2 
LNCipedia gene ID: lnc-SPACA5B-3
Location (hg19): chrX:47930593-47936297
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 553 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000111174.1|FTMT29100003613.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -25.1622 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPACA5B-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SSX6-2:2
5.0 lnc-SSX6-2:2
5.1 lnc-ERAS-29:2
5.2 lnc-SPACA5B-3:2