Transcript: lnc-SPACA9-1:2

Basic information

LNCipedia transcript ID: lnc-SPACA9-1:2 
LNCipedia gene ID: lnc-SPACA9-1
Location (hg19): chr9:135822456-135826943
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 526 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000443690.1; RP11-295G24.4-001; OTTHUMT00000054804.1; NONHSAT135278
Alternative gene names: ENSG00000233800.2; RP11-295G24.4; OTTHUMG00000020845.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5338 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPACA9-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf9-1:1
4.0 lnc-C9orf9-1:1
4.1 lnc-GFI1B-1:3
5.0 lnc-GFI1B-1:3
5.1 lnc-RPL7A-11:2
5.2 lnc-SPACA9-1:2