Transcript: lnc-SPANXN2-4:2

Basic information

LNCipedia transcript ID: lnc-SPANXN2-4:2 
LNCipedia gene ID: lnc-SPANXN2-4
Location (hg19): chrX:143437540-143814254
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 390 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000114629.1|ENCT00000482457.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -129.3039 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPANXN2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPANXN2-4:2
5.0 lnc-SPANXN2-4:2
5.1 lnc-ETDB-58:1
5.2 lnc-SPANXN2-4:2