Transcript: lnc-SPATA17-3:1

Basic information

LNCipedia transcript ID: lnc-SPATA17-3:1 
LNCipedia gene ID: lnc-SPATA17-3
Ensembl Gene ID: ENSG00000230714
Ensembl Transcript ID: ENST00000420347
Location (hg19): chr1:218205177-218207002
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 215 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000392; ENST00000420347; ENST00000420347.1; RP11-152L7.1-001; OTTHUMT00000095285.1; NONHSAT009510
Alternative gene names: XLOC_000562; linc-RRP15-3; ENSG00000230714; RP11-152L7.1; ENSG00000230714.1; OTTHUMG00000039495.1; AL355526.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.8637 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA17-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA17-2:1
3.1 lnc-SPATA17-3:1
4.0 lnc-SPATA17-3:1
4.1 lnc-SPATA17-3:1
5.0 lnc-SPATA17-3:1
5.1 lnc-CAPN2-79:1
5.2 lnc-SPATA17-3:1