Transcript: lnc-SPATA19-5:1

Basic information

LNCipedia transcript ID: lnc-SPATA19-5:1 
LNCipedia gene ID: lnc-SPATA19-5
Location (hg19): chr11:133167084-133172529
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5446 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT025205
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.8928 non-coding 
CPAT coding probability 7.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA19-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA19-5:1
4.0 lnc-SPATA19-5:1
4.1 lnc-SPATA19-5:1
5.0 lnc-SPATA19-5:1
5.1 lnc-IGSF9B-9:1
5.2 lnc-SPATA19-5:1