Transcript: lnc-SPATA31A3-1:2

Basic information

LNCipedia transcript ID: lnc-SPATA31A3-1:2 
LNCipedia gene ID: lnc-SPATA31A3-1
Location (hg19): chr9:40715662-40722679
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1745 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000604146.1
Alternative gene names: ENSG00000204844.7; FAM74A3; OTTHUMG00000067149


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.8435 non-coding 
CPAT coding probability 42.53% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA31A3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM75A3-1:2
4.0 FAM74A3:2
4.1 FAM74A3:2
5.0 FAM74A3:2
5.1 lnc-ZFAND5-46:2
5.2 lnc-SPATA31A3-1:2