Transcript: lnc-SPATA31A3-3:2

Basic information

LNCipedia transcript ID: lnc-SPATA31A3-3:2 
LNCipedia gene ID: lnc-SPATA31A3-3
Location (hg19): chr9:65880533-65883885
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 793 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00015821; ENST00000448485; ENST00000448485.1; RP11-118H15.1-001; OTTHUMT00000143938.1; NONHSAT131512
Alternative gene names: XLOC_007704; linc-FAM75A7-10; ENSG00000233022; RP11-118H15.1; ENSG00000233022.1; OTTHUMG00000067240.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.8707 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31A3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75A7-3:1
3.1 lnc-FAM75A7-3:1
4.0 lnc-FAM75A7-3:1
4.1 lnc-FAM75A7-3:1
5.0 lnc-FAM75A7-3:1
5.1 lnc-ZFAND5-42:2
5.2 lnc-SPATA31A3-3:2