Transcript: lnc-SPATA31A5-1:3

Basic information

LNCipedia transcript ID: lnc-SPATA31A5-1:3 
LNCipedia gene ID: lnc-SPATA31A5-1
RefSeq ID: NR_110999
Location (hg19): chr9:41516054-41521999
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 775 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000538713; ENST00000538713.1; FAM74A6-201; NR_110999; ENST00000613896.1; NR_110999.1
Alternative gene names: ENSG00000234407; FAM74A6; ENSG00000234407.3; OTTHUMG00000058151.2; ENSG00000274516.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.3873 non-coding 
CPAT coding probability 21.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA31A5-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75A5-1:2
3.1 lnc-FAM75A5-1:2
4.0 FAM74A6:3
4.1 FAM74A6:3
5.0 FAM74A6:3
5.1 lnc-ZNF658-76:3
5.2 lnc-SPATA31A5-1:3