Transcript: lnc-SPATA31D4-6:2

Basic information

LNCipedia transcript ID: lnc-SPATA31D4-6:2 
LNCipedia gene ID: lnc-SPATA31D4-6
Location (hg19): chr9:84258080-84259986
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 625 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3794_chr9:84258079-84259986_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.8307 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31D4-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM75D1-6:2
4.0 lnc-FAM75D1-6:2
4.1 lnc-FAM75D1-6:2
5.0 lnc-FAM75D1-6:2
5.1 lnc-SECISBP2-92:2
5.2 lnc-SPATA31D4-6:2