Transcript: lnc-SPATA32-2:13

Basic information

LNCipedia transcript ID: lnc-SPATA32-2:13 
LNCipedia gene ID: lnc-SPATA32-2
Ensembl Gene ID: ENSG00000267121
Ensembl Transcript ID: ENST00000586376
Location (hg19): chr17:43268298-43299132
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 844 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT054029; ENST00000586376.1; ENST00000586376.5
Alternative gene names: ENSG00000267121.1; CTD-2020K17.1; ENSG00000267121.5; AC008105.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.7702 non-coding 
CPAT coding probability 62.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA32-2:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf46-2:5
4.0 lnc-C17orf46-2:5
4.1 lnc-C17orf46-2:5
5.0 lnc-C17orf46-2:5
5.1 lnc-GFAP-19:13
5.2 lnc-SPATA32-2:13