Transcript: lnc-SPATA32-2:3

Basic information

LNCipedia transcript ID: lnc-SPATA32-2:3 
LNCipedia gene ID: lnc-SPATA32-2
Location (hg19): chr17:43291377-43299626
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6263 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267121.1|HBMT00000629919.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.1024 non-coding 
CPAT coding probability 94.82% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA32-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C17orf46-2:12
5.0 lnc-C17orf46-2:12
5.1 lnc-GFAP-19:3
5.2 lnc-SPATA32-2:3