Transcript: lnc-SPATA5L1-2:1

Basic information

LNCipedia transcript ID: lnc-SPATA5L1-2:1 
LNCipedia gene ID: lnc-SPATA5L1-2
Ensembl Gene ID: ENSG00000275672
Ensembl Transcript ID: ENST00000617932
Location (hg19): chr15:45670898-45672321
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1424 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT042239; NR_033252; ENST00000617932.1
Alternative gene names: ENSG00000275672.1; GATM-AS1; AC025580.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.7134 non-coding 
CPAT coding probability 4.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA5L1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA5L1-2:1
4.0 lnc-SPATA5L1-2:1
4.1 lnc-SPATA5L1-2:1
5.0 lnc-SPATA5L1-2:1
5.1 lnc-CCNDBP1-40:1
5.2 lnc-SPATA5L1-2:1