Transcript: lnc-SPATA6-4:1

Basic information

LNCipedia transcript ID: lnc-SPATA6-4:1 
LNCipedia gene ID: lnc-SPATA6-4
Ensembl Gene ID: ENSG00000272491
Ensembl Transcript ID: ENST00000606809
Location (hg19): chr1:48693560-48695233
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1674 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT003122; ENST00000606809.1
Alternative gene names: ENSG00000272491.1; RP5-1024N4.4; AL109659.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.191 non-coding 
CPAT coding probability 35.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA6-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA6-4:1
4.0 lnc-SPATA6-4:1
4.1 lnc-SPATA6-4:1
5.0 lnc-SPATA6-4:1
5.1 lnc-STIL-16:1
5.2 lnc-SPATA6-4:1