Transcript: lnc-SPATC1-1:1

Basic information

LNCipedia transcript ID: lnc-SPATC1-1:1 
LNCipedia gene ID: lnc-SPATC1-1
Location (hg19): chr8:145104030-145105967
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1279 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000561181.1; CTD-3065J16.6-002; OTTHUMT00000418047.1; ENST00000561181.5
Alternative gene names: ENSG00000204791.4; CTD-3065J16.6; OTTHUMG00000165434.2; ENSG00000204791.8; SMPD5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 34.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATC1-1:1
4.0 lnc-SPATC1-1:1
4.1 lnc-SPATC1-1:1
5.0 lnc-SPATC1-1:1
5.1 lnc-GPT-26:1
5.2 lnc-SPATC1-1:1