Transcript: lnc-SPCS3-2:1

Basic information

LNCipedia transcript ID: lnc-SPCS3-2:1 
LNCipedia gene ID: lnc-SPCS3-2
Ensembl Gene ID: ENSG00000248388
Ensembl Transcript ID: ENST00000509194
Location (hg19): chr4:177590772-177627299
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 332 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509194.1; RP11-313E19.2-002; OTTHUMT00000361988.1; NONHSAT099364
Alternative gene names: ENSG00000248388.1; RP11-313E19.2; OTTHUMG00000160733.1; ENSG00000248388.5; AC093801.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.7286 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPCS3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPCS3-2:1
4.0 lnc-SPCS3-2:1
4.1 lnc-SPCS3-2:1
5.0 lnc-SPCS3-2:1
5.1 lnc-GALNTL6-47:1
5.2 lnc-SPCS3-2:1