Transcript: lnc-SPECC1-1:3

Basic information

LNCipedia transcript ID: lnc-SPECC1-1:3 
LNCipedia gene ID: lnc-SPECC1-1
Location (hg19): chr17:20320741-20322363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1623 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT146570
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.8072 non-coding 
CPAT coding probability 30.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPECC1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM106B-1:5
4.0 lnc-FAM106B-1:5
4.1 lnc-FAM106B-1:5
5.0 lnc-FAM106B-1:5
5.1 lnc-PIPOX-114:2
5.2 lnc-SPECC1-1:3