Transcript: lnc-SPECC1-2:1

Basic information

LNCipedia transcript ID: lnc-SPECC1-2:1 
LNCipedia gene ID: lnc-SPECC1-2
Ensembl Gene ID: ENSG00000266839
Ensembl Transcript ID: ENST00000580993
Location (hg19): chr17:20226371-20226650
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 280 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580993.1; RP11-121A13.3-001; OTTHUMT00000442507.2; NONHSAT146560
Alternative gene names: ENSG00000266839.1; RP11-121A13.3; OTTHUMG00000178568.2; ENSG00000266839.2; U6; ENSG00000266839.3; AC008088.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.9634 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPECC1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPECC1-2:1
4.0 lnc-SPECC1-2:1
4.1 lnc-SPECC1-2:1
5.0 lnc-SPECC1-2:1
5.1 lnc-PIPOX-117:1
5.2 lnc-SPECC1-2:1