Transcript: lnc-SPERT-1:1

Basic information

LNCipedia transcript ID: lnc-SPERT-1:1 
LNCipedia gene ID: lnc-SPERT-1
Location (hg19): chr13:46295094-46295826
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 229 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021781; NONHSAT033619
Alternative gene names: XLOC_010379; linc-LRCH1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.7102 non-coding 
CPAT coding probability 9.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPERT-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPERT-1:1
3.1 lnc-SPERT-1:1
4.0 lnc-SPERT-1:1
4.1 lnc-SPERT-1:1
5.0 lnc-SPERT-1:1
5.1 lnc-KL-140:1
5.2 lnc-SPERT-1:1