Transcript: lnc-SPHKAP-2:1

Basic information

LNCipedia transcript ID: lnc-SPHKAP-2:1 
LNCipedia gene ID: lnc-SPHKAP-2
Location (hg19): chr2:229056221-229184355
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 678 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT077232
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.2466 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPHKAP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPHKAP-2:1
4.0 lnc-SPHKAP-2:1
4.1 lnc-SPHKAP-2:1
5.0 lnc-SPHKAP-2:1
5.1 lnc-HTR2B-29:1
5.2 lnc-SPHKAP-2:1