Transcript: lnc-SPIDR-1:7

Basic information

LNCipedia transcript ID: lnc-SPIDR-1:7 
LNCipedia gene ID: lnc-SPIDR-1
Ensembl Gene ID: ENSG00000255366
Ensembl Transcript ID: ENST00000528139
Location (hg19): chr8:48102395-48104885
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2491 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528139.1; RP11-1134I14.8-001; OTTHUMT00000384713.1; NONHSAT126437
Alternative gene names: ENSG00000255366.1; RP11-1134I14.8; OTTHUMG00000164145.2; AC120036.5; AC120036.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.7864 non-coding 
CPAT coding probability 8.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPIDR-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1134I14.8.1-1:1
4.0 lnc-RP11-1134I14.8.1-1:1
4.1 lnc-RP11-1134I14.8.1-1:1
5.0 lnc-RP11-1134I14.8.1-1:1
5.1 lnc-KCNU1-128:7
5.2 lnc-SPIDR-1:7