Transcript: lnc-SPINK4-4:1

Basic information

LNCipedia transcript ID: lnc-SPINK4-4:1 
LNCipedia gene ID: lnc-SPINK4-4
Location (hg19): chr9:33165996-33179929
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1050 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233554.1|FTMT23500015930.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.6485 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPINK4-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 B4GALT1-AS1:10
5.0 B4GALT1-AS1:10
5.1 lnc-RECK-325:1
5.2 lnc-SPINK4-4:1