Transcript: lnc-SPINK4-4:6

Basic information

LNCipedia transcript ID: lnc-SPINK4-4:6 
LNCipedia gene ID: lnc-SPINK4-4
Location (hg19): chr9:33167561-33180512
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2012 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233554.1|HBMT00001460526.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.7503 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPINK4-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 B4GALT1-AS1:17
5.0 B4GALT1-AS1:17
5.1 lnc-RECK-325:6
5.2 lnc-SPINK4-4:6