Transcript: lnc-SPINK5-3:2

Basic information

LNCipedia transcript ID: lnc-SPINK5-3:2 
LNCipedia gene ID: lnc-SPINK5-3
Location (hg19): chr5:147526413-147531995
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1645 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000077978.1|MICT00000291011.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -95.6437 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPINK5-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPINK5-3:2
5.0 lnc-SPINK5-3:2
5.1 lnc-AFAP1L1-20:2
5.2 lnc-SPINK5-3:2