Transcript: lnc-SPNS3-1:7

Basic information

LNCipedia transcript ID: lnc-SPNS3-1:7 
LNCipedia gene ID: lnc-SPNS3-1
Location (hg19): chr17:4063018-4063879
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 808 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025805; NONHSAT145051
Alternative gene names: XLOC_012083; linc-SPNS3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.1189 non-coding 
CPAT coding probability 5.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPNS3-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYB5D2-1:1
3.1 lnc-CYB5D2-1:1
4.0 lnc-CYB5D2-1:1
4.1 lnc-CYB5D2-1:1
5.0 lnc-CYB5D2-1:1
5.1 lnc-RPA1-75:4
5.2 lnc-SPNS3-1:7