Transcript: lnc-SPNS3-1:8

Basic information

LNCipedia transcript ID: lnc-SPNS3-1:8 
LNCipedia gene ID: lnc-SPNS3-1
Location (hg19): chr17:4063068-4063653
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 386 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025806; NONHSAT145052
Alternative gene names: XLOC_012083; linc-SPNS3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.3268 non-coding 
CPAT coding probability 12.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPNS3-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYB5D2-1:2
3.1 lnc-CYB5D2-1:2
4.0 lnc-CYB5D2-1:2
4.1 lnc-CYB5D2-1:2
5.0 lnc-CYB5D2-1:2
5.1 lnc-RPA1-75:5
5.2 lnc-SPNS3-1:8