Transcript: lnc-SPP2-1:1

Basic information

LNCipedia transcript ID: lnc-SPP2-1:1 
LNCipedia gene ID: lnc-SPP2-1
Location (hg19): chr2:235017360-235018125
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 598 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00003127; ENST00000437967; ENST00000437967.1; AC006037.2-001; OTTHUMT00000131317.1; NONHSAT077527
Alternative gene names: XLOC_001901; linc-SH3BP4-3; ENSG00000226442; AC006037.2; ENSG00000226442.1; OTTHUMG00000059209.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -253.4629 non-coding 
CPAT coding probability 5.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPP2-1:1
3.1 lnc-SPP2-1:1
4.0 lnc-SPP2-1:1
4.1 lnc-SPP2-1:1
5.0 lnc-SPP2-1:1
5.1 lnc-ACKR3-31:2
5.2 lnc-SPP2-1:1