Transcript: lnc-SPP2-8:1

Basic information

LNCipedia transcript ID: lnc-SPP2-8:1 
LNCipedia gene ID: lnc-SPP2-8
Location (hg19): chr2:235198670-235201301
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2632 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000047096.1|ENCT00000237339.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.7625 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPP2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SPP2-8:1
5.0 lnc-SPP2-8:1
5.1 lnc-ACKR3-29:1
5.2 lnc-SPP2-8:1