Transcript: lnc-SPPL3-2:1

Basic information

LNCipedia transcript ID: lnc-SPPL3-2:1 
LNCipedia gene ID: lnc-SPPL3-2
Ensembl Gene ID: ENSG00000256569
Ensembl Transcript ID: ENST00000544939
Location (hg19): chr12:121159310-121161442
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 569 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544939.1; RP11-173P15.5-001; OTTHUMT00000402860.1; NONHSAT031218
Alternative gene names: ENSG00000256569.1; RP11-173P15.5; OTTHUMG00000169202.1; AC069234.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 4.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPPL3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPPL3.1-2:1
4.0 lnc-SPPL3.1-2:1
4.1 lnc-SPPL3.1-2:1
5.0 lnc-SPPL3.1-2:1
5.1 lnc-SRSF9-9:1
5.2 lnc-SPPL3-2:1