Transcript: lnc-SPRY1-11:11

Basic information

LNCipedia transcript ID: lnc-SPRY1-11:11 
LNCipedia gene ID: lnc-SPRY1-11
Location (hg19): chr4:124445842-124447252
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1301 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_24026_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.6082 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRY1-11:11 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPRY1-1:8
4.0 lnc-SPRY1-1:8
4.1 LINC01091:22
5.0 LINC01091:22
5.1 lnc-FGF2-11:12
5.2 lnc-SPRY1-11:11