Transcript: lnc-SPRY1-11:35

Basic information

LNCipedia transcript ID: lnc-SPRY1-11:35 
HGNC Gene Symbol: lnc-SPRY1-11    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1091
Ensembl Gene ID: ENSG00000249464
Ensembl Transcript ID: ENST00000515769
Location (hg19): chr4:124695419-124786728
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2204 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515769; ENST00000515769.1; RP11-93L9.1-004; OTTHUMT00000364450.1
Alternative gene names: ENSG00000249464; RP11-93L9.1; ENSG00000249464.1; OTTHUMG00000161162.3; LINC01091; ENSG00000249464.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.2552 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPRY1-11:35 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRY1-2:4
3.1 lnc-SPRY1-2:4
4.0 LINC01091:8
4.1 LINC01091:8
5.0 LINC01091:8
5.1 lnc-FGF2-11:36
5.2 lnc-SPRY1-11:35