Transcript: lnc-SPTBN5-6:1

Basic information

LNCipedia transcript ID: lnc-SPTBN5-6:1 
LNCipedia gene ID: lnc-SPTBN5-6
Ensembl Gene ID: ENSG00000278493
Ensembl Transcript ID: ENST00000622261
Location (hg19): chr15:42200402-42200912
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 511 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622261.1
Alternative gene names: ENSG00000278493.1; CTD-2382E5.6; AC039056.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -156.5779 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPTBN5-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SPTBN5-6:1
4.1 lnc-SPTBN5-6:1
5.0 lnc-SPTBN5-6:1
5.1 lnc-VPS39-6:1
5.2 lnc-SPTBN5-6:1