Transcript: lnc-SPTLC1-2:1

Basic information

LNCipedia transcript ID: lnc-SPTLC1-2:1 
LNCipedia gene ID: lnc-SPTLC1-2
Location (hg19): chr9:94912663-94919727
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 211 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000415471; ENST00000415471.1; RP11-100G15.10-001; OTTHUMT00000053047.1; NONHSAT133175
Alternative gene names: ENSG00000236717; RP11-100G15.10; ENSG00000236717.1; OTTHUMG00000020214.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPTLC1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPTLC1-2:1
3.1 lnc-SPTLC1-2:1
4.0 lnc-SPTLC1-2:1
4.1 lnc-SPTLC1-2:1
5.0 lnc-SPTLC1-2:1
5.1 lnc-SEMA4D-65:1
5.2 lnc-SPTLC1-2:1