Transcript: lnc-SPTLC1-2:2

Basic information

LNCipedia transcript ID: lnc-SPTLC1-2:2 
LNCipedia gene ID: lnc-SPTLC1-2
Location (hg19): chr9:94912664-94919727
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 210 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000415471.2
Alternative gene names: ENSG00000236717.2; RP11-100G15.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPTLC1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPTLC1-2:2
4.0 lnc-SPTLC1-2:2
4.1 lnc-SPTLC1-2:2
5.0 lnc-SPTLC1-2:2
5.1 lnc-SEMA4D-65:2
5.2 lnc-SPTLC1-2:2