Transcript: lnc-SPTSSA-2:1

Basic information

LNCipedia transcript ID: lnc-SPTSSA-2:1 
LNCipedia gene ID: lnc-SPTSSA-2
Location (hg19): chr14:34885893-34886808
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 916 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT036328
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 133.5418 coding 
CPAT coding probability 34.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPTSSA-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPTSSA-2:1
4.0 lnc-SPTSSA-2:1
4.1 lnc-SPTSSA-2:1
5.0 lnc-SPTSSA-2:1
5.1 lnc-EFS-129:1
5.2 lnc-SPTSSA-2:1