Transcript: lnc-SPZ1-1:10

Basic information

LNCipedia transcript ID: lnc-SPZ1-1:10 
LNCipedia gene ID: lnc-SPZ1-1
Location (hg19): chr5:79552919-79554203
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1285 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT102395; FPKM1_group_25665_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.2537 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPZ1-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPZ1-2:1
4.0 lnc-SPZ1-2:1
4.1 lnc-SPZ1-1:10
5.0 lnc-SPZ1-1:10
5.1 lnc-FAM151B-4:9
5.2 lnc-SPZ1-1:10