Transcript: lnc-SREK1-1:1

Basic information

LNCipedia transcript ID: lnc-SREK1-1:1 
LNCipedia gene ID: lnc-SREK1-1
Location (hg19): chr5:65492117-65867801
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2403 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000535074; ENST00000535074.1; RP11-305P14.1-201; NONHSAT101784
Alternative gene names: ENSG00000251391; RP11-305P14.1; ENSG00000251391.3; OTTHUMG00000164090.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.9947 non-coding 
CPAT coding probability 11.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SREK1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SREK1-1:1
3.1 lnc-SREK1-1:1
4.0 lnc-SREK1-1:1
4.1 lnc-SREK1-1:1
5.0 lnc-SREK1-1:1
5.1 lnc-NLN-20:1
5.2 lnc-SREK1-1:1