Transcript: lnc-SREK1IP1-1:1

Basic information

LNCipedia transcript ID: lnc-SREK1IP1-1:1 
LNCipedia gene ID: lnc-SREK1IP1-1
Location (hg19): chr5:63700339-63782442
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1100 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT101727
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9599 non-coding 
CPAT coding probability 67.77% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SREK1IP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SREK1IP1-1:1
4.0 lnc-SREK1IP1-1:1
4.1 lnc-SREK1IP1-1:1
5.0 lnc-SREK1IP1-1:1
5.1 lnc-TRIM23-17:1
5.2 lnc-SREK1IP1-1:1