Transcript: lnc-SRGAP2C-5:4

Basic information

LNCipedia transcript ID: lnc-SRGAP2C-5:4 
LNCipedia gene ID: lnc-SRGAP2C-5
Location (hg19): chr1:121166923-121171134
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 496 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000290; ENST00000445260; ENST00000445260.1; AL358175.2-001; OTTHUMT00000036733.1; NONHSAT005612
Alternative gene names: XLOC_000375; linc-NBPF9-9; ENSG00000231429; AL358175.2; ENSG00000231429.1; OTTHUMG00000013086.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.2724 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRGAP2C-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM72B-3:3
3.1 lnc-FAM72B-5:3
4.0 lnc-FAM72B-5:3
4.1 lnc-FAM72B-5:3
5.0 lnc-FAM72B-5:3
5.1 lnc-FCGR1B-5:6
5.2 lnc-SRGAP2C-5:4