Transcript: lnc-SRPK2-1:4

Basic information

LNCipedia transcript ID: lnc-SRPK2-1:4 
LNCipedia gene ID: lnc-SRPK2-1
Location (hg19): chr7:104653758-104654454
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 543 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013916; NONHSAT122598
Alternative gene names: XLOC_006554; linc-ORC5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.6889 non-coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRPK2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRPK2-1:3
3.1 lnc-SRPK2-1:4
4.0 lnc-SRPK2-1:4
4.1 lnc-SRPK2-1:4
5.0 lnc-SRPK2-1:4
5.1 lnc-POLR2J2-25:10
5.2 lnc-SRPK2-1:4