Transcript: lnc-SRSF1-1:2

Basic information

LNCipedia transcript ID: lnc-SRSF1-1:2 
LNCipedia gene ID: lnc-SRSF1-1
Location (hg19): chr17:56154494-56160565
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 5871 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000499710; TCONS_00025245
Alternative gene names: ENSG00000246806; XLOC_012535; linc-SRSF1; AC015813.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.8545 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRSF1-1:2 no no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRSF1-1:1
3.1 lnc-SRSF1-1:2
4.0 lnc-SRSF1-1:2
4.1 lnc-SRSF1-1:2
5.0 lnc-SRSF1-1:2
5.1 lnc-PTRH2-33:1
5.2 lnc-SRSF1-1:2