Transcript: lnc-SRSF2-4:1

Basic information

LNCipedia transcript ID: lnc-SRSF2-4:1 
LNCipedia gene ID: lnc-SRSF2-4
Ensembl Gene ID: ENSG00000263718
Ensembl Transcript ID: ENST00000581153
RefSeq ID: NR_136503
Location (hg19): chr17:75269866-75277979
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 695 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000581153.1; RP11-285E9.6-001; OTTHUMT00000438609.1; NONHSAT056138; NR_136503.1
Alternative gene names: ENSG00000263718.1; RP11-285E9.6; OTTHUMG00000177704.1; ENSG00000263718.2; AC068594.1; LOC105371907


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.284 non-coding 
CPAT coding probability 10.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRSF2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRSF2-4:1
4.0 lnc-SRSF2-4:1
4.1 lnc-SRSF2-4:1
5.0 lnc-SRSF2-4:1
5.1 lnc-ST6GALNAC2-21:1
5.2 lnc-SRSF2-4:1