Transcript: lnc-SRY-5:2

Basic information

LNCipedia transcript ID: lnc-SRY-5:2 
LNCipedia gene ID: lnc-SRY-5
Location (hg19): chrY:1465320-1467852
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 357 bp
Exons: 2
Sources: Broad Institute; Gencode v13; NONCODE v4
Alternative transcript names: TCONS_00017617; ENSTR0000434938.1; LINC00106-002; OTTHUMT00000337679.1; NONHSAT139266
Alternative gene names: XLOC_008306; linc-SLC25A6-1; ENSGR0000236871.1; LINC00106; OTTHUMG00000021061.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.2995 non-coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRY-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRY-2:2
3.1 lnc-SRY-5:2
4.0 lnc-SRY-5:2
4.1 lnc-SRY-5:2
5.0 lnc-SRY-5:2
5.1 lnc-DAZ1-160:2
5.2 lnc-SRY-5:2