Transcript: lnc-SSH1-1:1

Basic information

LNCipedia transcript ID: lnc-SSH1-1:1 
LNCipedia gene ID: lnc-SSH1-1
Location (hg19): chr12:109171968-109174194
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2227 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000578927.1; RP11-423G4.9-001; OTTHUMT00000443295.1; NONHSAT030571
Alternative gene names: ENSG00000264043.1; RP11-423G4.9; OTTHUMG00000178771.1; ENSG00000264043.2; SNORA40


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5708 non-coding 
CPAT coding probability 8.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSH1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SSH1-1:1
4.0 lnc-SSH1-1:1
4.1 lnc-SSH1-1:1
5.0 lnc-SSH1-1:1
5.1 lnc-GPN3-34:1
5.2 lnc-SSH1-1:1