Transcript: lnc-SSTR4-1:1

Basic information

LNCipedia transcript ID: lnc-SSTR4-1:1 
LNCipedia gene ID: lnc-SSTR4-1
Ensembl Gene ID: ENSG00000234646
Ensembl Transcript ID: ENST00000440921
Location (hg19): chr20:23012179-23019873
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 411 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440921.1; RP4-753D10.3-001; OTTHUMT00000078304.1; NONHSAT079024; ENST00000440921.5
Alternative gene names: ENSG00000234646.1; RP4-753D10.3; OTTHUMG00000032051.1; ENSG00000234646.5; ENSG00000234646.6; AL049651.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.7153 non-coding 
CPAT coding probability 7.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSTR4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SSTR4-1:1
4.0 lnc-SSTR4-1:1
4.1 lnc-SSTR4-1:1
5.0 lnc-SSTR4-1:1
5.1 lnc-CST8-16:1
5.2 lnc-SSTR4-1:1