Transcript: lnc-SSUH2-11:2

Basic information

LNCipedia transcript ID: lnc-SSUH2-11:2 
LNCipedia gene ID: lnc-SSUH2-11
Ensembl Gene ID: ENSG00000270207
Ensembl Transcript ID: ENST00000604028
Location (hg19): chr3:7648577-7649584
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1008 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000604028.1
Alternative gene names: ENSG00000270207.1; RP11-157E16.1; AC068313.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.5831 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSUH2-11:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf32-11:2
4.0 lnc-C3orf32-11:2
4.1 lnc-C3orf32-11:2
5.0 lnc-C3orf32-11:2
5.1 lnc-PRRT3-32:2
5.2 lnc-SSUH2-11:2