Transcript: lnc-ST3GAL4-10:2

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-10:2 
LNCipedia gene ID: lnc-ST3GAL4-10
Ensembl Gene ID: ENSG00000273409
Ensembl Transcript ID: ENST00000637808
Location (hg19): chr11:127140924-127181831
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 351 bp
Exons: 3
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637808.1
Alternative gene names: ENSG00000273409.2; RP11-480C22.1; AP003481.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -195.4191 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-10:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-168K9.2.1-3:5
5.0 lnc-RP11-168K9.2.1-3:5
5.1 lnc-JAM3-52:2
5.2 lnc-ST3GAL4-10:2