Transcript: lnc-ST3GAL4-4:3

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-4:3 
LNCipedia gene ID: lnc-ST3GAL4-4
Ensembl Gene ID: ENSG00000254607
Ensembl Transcript ID: ENST00000550747
Location (hg19): chr11:126522747-126551998
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 399 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550747.1
Alternative gene names: ENSG00000254607.2; RP11-115C10.1; AP001783.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.9615 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-115C10.1.1-2:2
4.0 lnc-RP11-115C10.1.1-2:2
4.1 lnc-RP11-115C10.1.1-2:2
5.0 lnc-RP11-115C10.1.1-2:2
5.1 lnc-JAM3-60:3
5.2 lnc-ST3GAL4-4:3